Computational Systems Biology Laboratory
the research group of Dr. Jason Papin in the Department of Biomedical Engineering
Reconstructions
Homo sapiens (iHsa) and Rattus norvegicus (iRno)Chlamydomonas reinhardtii
Escherichia coli
Leishmania major
Pseudomonas aeruginosa
Pseudomonas putida
Trypanosoma cruzi
Xenopus laevis
Burkholderia cepacia complex
Algorithms
BOSSidFBA
MADE
TIGER
Tools
MetDraw: Automated metabolic maps and data visualizationMatNet: MATLAB-NetLogo Model of Pseudomonas Biofilm Formation
Other
Perl script to convert Simpheny output to SBML level 2, version 1 (modified from Feist & Palsson)Adenoid Cystic Carcinoma Database