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Added lines 18-22:
Yang JH, Polanowska-Grabowska RK, Smith JS, Shields CW 4th, Saucerman JJ. PKA catalytic subunit compartmentation regulates contractile and hypertrophic responses to β-adrenergic signaling. J Mol Cell Cardiol. 2014 Jan;66:83-93.
[=[=][[http://www.ncbi.nlm.nih.gov/pubmed/24225179 | Pubmed]]]

->MATLAB code: [=[=][[http://people.virginia.edu/~jjs3g/lab_webpage/downloads/yang_jmcc2014.zip | download]]]\\\
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->MATLAB code: [=[=][[http://people.virginia.edu/~jjs3g/lab_webpage/downloads/yang_jmcc2012.zip | download]]]\\\
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->MATLAB code: [=[=][[http://people.virginia.edu/~jjs3g/lab_webpage/downloads/yang_jmcc2012v102.zip | download]]]\\\
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-->Netflux version 0.09a: [=[=][[http://people.virginia.edu/~jjs3g/lab_webpage/downloads/NetfluxSC_09a.zip | download]]]
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->CellProfiler pipeline [=[=][[http://people.virginia.edu/~jjs3g/lab_webpage/downloads/Bass_JMCC2012/Ryall_JMCC2012.zip | download]]]\\\
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->CellProfiler pipeline [=[=][[http://people.virginia.edu/~jjs3g/lab_webpage/downloads/Ryall_JMCC2012.zip | download]]]\\\
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Ryall KA, *Saucerman JJ. Automated imaging reveals a concentration-dependent delay in reversibility of cardiac myocyte hypertrophy. J Mol Cell Cardiol, 2012 53(2):282-90. PMCID: 3389167. [=[=][[http://www.ncbi.nlm.nih.gov/pubmed/22575844 | Pubmed]]]

->CellProfiler pipeline [=[=][[http://people.virginia.edu/~jjs3g/lab_webpage/downloads/Bass_JMCC2012/Ryall_JMCC2012.zip | download]]]\\\
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-->MATLAB code and Netflux spreadsheet: [=[=][[http://people.virginia.edu/~jjs3g/lab_webpage/downloads/ryall_jbc2012.zip | download]]]
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-->MATLAB code and Netflux spreadsheet: [=[=][[http://people.virginia.edu/~jjs3g/lab_webpage/downloads/ryall_JBC2012.zip | download]]]
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''Yang JH'', Saucerman JJ. Phospholemman is a negative feed-forward regulator of Ca2+ in β-adrenergic signaling, accelerating β-adrenergic inotropy. J Mol Cell Cardiol. 2012; 52(5):1048-55. PMCID: 3327824. [=[=][[http://www.ncbi.nlm.nih.gov/pubmed/22289214 | Pubmed]]]
to:
Ryall KA, Holland DO, Delaney KA, Kraeutler MJ, Parker AJ, Saucerman JJ. Network reconstruction and systems analysis of cardiac myocyte hypertrophy signaling. J Biol Chem. 2012 Oct 22. [=[=][[http://www.ncbi.nlm.nih.gov/pubmed/23091058 | Pubmed]]]

-->MATLAB code and Netflux spreadsheet: [=[=][[http://people.virginia.edu/~jjs3g/lab_webpage/downloads/ryall_jbc2012.zip | download]]]
-->Netflux software: [=[=][[http://code.google.com/p/netflux/ | link]]]

Yang JH
, Saucerman JJ. Phospholemman is a negative feed-forward regulator of Ca2+ in β-adrenergic signaling, accelerating β-adrenergic inotropy. J Mol Cell Cardiol. 2012; 52(5):1048-55. PMCID: 3327824. [=[=][[http://www.ncbi.nlm.nih.gov/pubmed/22289214 | Pubmed]]]
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Bass GT, Ryall KA, Katikapalli A, Taylor BE, Dang ST, Acton ST, Saucerman JJ. Automated image analysis identifies signaling pathways regulating distinct signatures of cardiac myocyte hypertrophy. J Mol Cell Cardiol. Accepted. 2011. [=[=][[http://dx.doi.org/10.1016/j.yjmcc.2011.11.009 | Link]]]
to:
Bass GT, Ryall KA, Katikapalli A, Taylor BE, Dang ST, Acton ST, Saucerman JJ. Automated image analysis identifies signaling pathways regulating distinct signatures of cardiac myocyte hypertrophy. J Mol Cell Cardiol. 2012; 52(5):923-30. PMCID: 3299901. [=[=][[http://dx.doi.org/10.1016/j.yjmcc.2011.11.009 | Link]]]
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Yang JH, Saucerman JJ. Phospholemman is a negative feed-forward regulator of Ca2+ in β-adrenergic signaling, accelerating β-adrenergic inotropy. J Mol Cell Cardiol. ''in press''. [=[=][[http://www.ncbi.nlm.nih.gov/pubmed/22289214 | Pubmed]]]
to:
''Yang JH'', Saucerman JJ. Phospholemman is a negative feed-forward regulator of Ca2+ in β-adrenergic signaling, accelerating β-adrenergic inotropy. J Mol Cell Cardiol. 2012; 52(5):1048-55. PMCID: 3327824. [=[=][[http://www.ncbi.nlm.nih.gov/pubmed/22289214 | Pubmed]]]
May 15, 2012, at 08:55 AM EST by 172.25.62.206 -
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->MATLAB code:\\\
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->MATLAB code: [=[=][[http://people.virginia.edu/~jjs3g/lab_webpage/downloads/amanfu_ieee2011.zip | download]]]\\\
April 25, 2012, at 04:19 PM EST by 128.143.235.21 -
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->MATLAB code:\\\
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->MATLAB code: [=[=][[http://people.virginia.edu/~jjs3g/lab_webpage/downloads/holland_plosone2011.zip | download]]]\\\
April 25, 2012, at 04:15 PM EST by 128.143.235.21 -
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->MATLAB code: [=[=][[http://people.virginia.edu/~jjs3g/lab_webpage/downloads/saucerman_biophysj2008.zip | download]]]
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->MATLAB code: [=[=][[http://people.virginia.edu/~jjs3g/lab_webpage/downloads/saucerman_biophysj2008.zip | download]]]\\\
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-->Virtual Cell Public model user: jsaucer, model: AKARmyocyte
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->Virtual Cell Public model user: jsaucer, model: AKARmyocyte\\\
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->MATLAB code: [=[=][[http://people.virginia.edu/~jjs3g/lab_webpage/downloads/saucerman_pbmb2004.m | download]]]
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->MATLAB code: [=[=][[http://people.virginia.edu/~jjs3g/lab_webpage/downloads/saucerman_pbmb2004.m | download]]]\\\
April 25, 2012, at 04:14 PM EST by 128.143.235.21 -
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Saucerman JJ, McCulloch AD. "Mechanistic systems models of cell signaling networks: a case study of myocyte adrenergic regulation." Prog Biophys Mol Biol. 2004 Jun-Jul;85(2-3):261-78. [=[=][[http://www.ncbi.nlm.nih.gov/pubmed/15142747 | Pubmed]]]\\\

->MATLAB code:

Saucerman JJ, Brunton LL, Michailova AP, McCulloch AD
. "Modeling beta-adrenergic control of cardiac myocyte contractility in silico." J Biol Chem. 2003 Nov 28;278(48):47997-8003. [=[=][[http://www.ncbi.nlm.nih.gov/pubmed/12972422 | Pubmed]]]\\\
to:
Saucerman JJ, McCulloch AD. "Mechanistic systems models of cell signaling networks: a case study of myocyte adrenergic regulation." Prog Biophys Mol Biol. 2004 Jun-Jul;85(2-3):261-78. [=[=][[http://www.ncbi.nlm.nih.gov/pubmed/15142747 | Pubmed]]]

->MATLAB code: [=[=][[http://people.virginia.edu/~jjs3g/lab_webpage/downloads/saucerman_pbmb2004.m | download]]]

Saucerman JJ, Brunton LL, Michailova AP, McCulloch AD
. "Modeling beta-adrenergic control of cardiac myocyte contractility in silico." J Biol Chem. 2003 Nov 28;278(48):47997-8003. [=[=][[http://www.ncbi.nlm.nih.gov/pubmed/12972422 | Pubmed]]]
April 25, 2012, at 04:11 PM EST by 128.143.235.21 -
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->MATLAB code:\\\
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->MATLAB code: [=[=][[http://people.virginia.edu/~jjs3g/lab_webpage/downloads/yang_jmcc2012.zip | download]]]\\\
April 25, 2012, at 04:07 PM EST by 128.143.235.21 -
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->MATLAB code:
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->MATLAB code:\\\

Soltis AR, Saucerman JJ. "Synergy between CaMKII substrates and β-adrenergic signaling in regulation of cardiac myocyte Ca(2+) handling." Biophys J. 2010;99(7):2038-47. [=[=][[http://www.ncbi.nlm.nih.gov/pubmed/20923637 | Pubmed]]]. '''Selected as a “Must Read” 8/10 by [=[=][[http://f1000.com/5952956 | Faculty of 1000]]].'''

->MATLAB code: [=[=][[http://people.virginia.edu/~jjs3g/lab_webpage/downloads/soltisBiophysJ2010.zip | download]]]\\\

Saucerman JJ, Bers DM. "Calmodulin mediates differential sensitivity of CaMKII and calcineurin to local Ca2+ in cardiac myocytes." Biophys J. 2008 Nov 15;95(10):4597-612. [=[=][[http://www.ncbi.nlm.nih.gov/pubmed/18689454 | Pubmed]]]

->MATLAB code: [=[=][[http://people.virginia.edu/~jjs3g/lab_webpage/downloads/saucerman_biophysj2008.zip | download]]]
April 25, 2012, at 04:04 PM EST by 128.143.235.21 -
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->MATLAB code: [=[=][[http://people.virginia.edu/~jjs3g/lab_webpage/downloads/saucerman_circres2004.zip | download]]].\\\
to:
->MATLAB code: [=[=][[http://people.virginia.edu/~jjs3g/lab_webpage/downloads/saucerman_circres2004.zip | download]]]\\\
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->MATLAB code:
[=[=][[http://people.virginia.edu/~jjs3g/lab_webpage/downloads/saucerman_jbc2003.zip | download]]].\\\
to:
->MATLAB code: [=[=][[http://people.virginia.edu/~jjs3g/lab_webpage/downloads/saucerman_jbc2003.zip | download]]]
April 25, 2012, at 04:03 PM EST by 128.143.235.21 -
Changed lines 28-29 from:
->MATLAB code: [[http://people.virginia.edu/~jjs3g/lab_webpage/downloads/saucerman_circres2004.zip | download]]].\\\
to:
->MATLAB code: [=[=][[http://people.virginia.edu/~jjs3g/lab_webpage/downloads/saucerman_circres2004.zip | download]]].\\\
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[[http://people.virginia.edu/~jjs3g/lab_webpage/downloads/saucerman_jbc2003.zip | download]]].\\\
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[=[=][[http://people.virginia.edu/~jjs3g/lab_webpage/downloads/saucerman_jbc2003.zip | download]]].\\\
April 25, 2012, at 04:01 PM EST by 128.143.235.21 -
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->MATLAB code:
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->MATLAB code:

Saucerman JJ, Zhang J, Martin JC, Peng LX, Stenbit AE, Tsien RY, McCulloch AD. "Systems analysis of PKA-mediated phosphorylation gradients in live cardiac myocytes." Proc Natl Acad Sci U S A. 2006 Aug 22;103(34):12923-8. [=[=][[http://www.ncbi.nlm.nih.gov/pubmed/16905651 | Pubmed]]]

-->Virtual Cell Public model user: jsaucer, model: AKARmyocyte

Saucerman JJ, Healy SN, Belik ME, Puglisi JL, McCulloch AD. "Proarrhythmic consequences of a KCNQ1 AKAP-binding domain mutation: computational models of whole cells and heterogeneous tissue." Circ Res. 2004 Dec 10;95(12):1216-24. [=[=][[http://www.ncbi.nlm.nih.gov/pubmed/15528464 | Pubmed]]]

->MATLAB code: [[http://people.virginia.edu/~jjs3g/lab_webpage/downloads/saucerman_circres2004.zip | download]]].\\\

Saucerman JJ, McCulloch AD. "Mechanistic systems models of cell signaling networks: a case study of myocyte adrenergic regulation." Prog Biophys Mol Biol. 2004 Jun-Jul;85(2-3):261-78. [=[=][[http://www.ncbi.nlm.nih.gov/pubmed/15142747 | Pubmed]]]\\\

->MATLAB code:

Saucerman JJ, Brunton LL, Michailova AP, McCulloch AD. "Modeling beta-adrenergic control of cardiac myocyte contractility in silico." J Biol Chem. 2003 Nov 28;278(48):47997-8003. [=[=][[http://www.ncbi.nlm.nih.gov/pubmed/12972422 | Pubmed]]]\\\

->MATLAB code:
[[http://people.virginia.edu/~jjs3g/lab_webpage/downloads/saucerman_jbc2003.zip | download]]].\\\
April 25, 2012, at 03:33 PM EST by 128.143.235.21 -
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!! Image Analysis Algorithms and Data\\\
to:
!! Image Analysis\\\
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CellProfiler pipeline and example images [=[=][[http://people.virginia.edu/~jjs3g/lab_webpage/downloads/Bass_JMCC2012/Bass_JMCC2012pipeline.zip | download]]]\\
CellProfiler is developed by Anne Carpenter at the Broad Institute and should be downloaded at [=[=][[http://www.cellprofiler.org/previousReleases.shtml | link]]]. Our data was processed using CellProfiler Developer build 1.0.7522 [=[=][[http://people.virginia.edu/~jjs3g/lab_webpage/downloads/Bass_JMCC2012/CellProfiler%20Developer%20r7522.zip | download]]].
to:
->CellProfiler pipeline and example images [=[=][[http://people.virginia.edu/~jjs3g/lab_webpage/downloads/Bass_JMCC2012/Bass_JMCC2012pipeline.zip | download]]]\\
CellProfiler is developed by Anne Carpenter at the Broad Institute and should be downloaded at [=[=][[http://www.cellprofiler.org/previousReleases.shtml | link]]]. Our data was processed using CellProfiler Developer build 1.0.7522 [=[=][[http://people.virginia.edu/~jjs3g/lab_webpage/downloads/Bass_JMCC2012/CellProfiler%20Developer%20r7522.zip | download]]].\\\

Amanfu, RK, Muller, J, Saucerman JJ. Automated image analysis of cardiac myocyte Ca2+ dynamics. Conf Proc IEEE Eng Med Biol Soc 2011. [=[=][[http://www.ncbi.nlm.nih.gov/pubmed/22255377 | Pubmed]]]

->MATLAB code:\\\

!!Computational Models\\\

Yang JH, Saucerman JJ. Phospholemman is a negative feed-forward regulator of Ca2+ in β-adrenergic signaling, accelerating β-adrenergic inotropy. J Mol Cell Cardiol. ''in press''. [=[=][[http://www.ncbi.nlm.nih.gov/pubmed/22289214 | Pubmed]]]

->MATLAB code:\\\

Holland DO, Krainak NC, Saucerman JJ. Graphical approach to model reduction for nonlinear biochemical networks. PLoS One. 2011;6(8):e23795. Epub 2011 Aug 25. [=[=][[http://www.ncbi.nlm.nih.gov/pubmed/21901136 | Pubmed]]]

->MATLAB code:
April 25, 2012, at 01:56 PM EST by 128.143.235.21 -
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Bass GT, Ryall KA, Katikapalli A, Taylor BE, Dang ST, Acton ST, Saucerman JJ. Automated image analysis identifies signaling pathways regulating distinct signatures of cardiac myocyte hypertrophy. J Mol Cell Cardiol 2012.
to:
Bass GT, Ryall KA, Katikapalli A, Taylor BE, Dang ST, Acton ST, Saucerman JJ. Automated image analysis identifies signaling pathways regulating distinct signatures of cardiac myocyte hypertrophy. J Mol Cell Cardiol. Accepted. 2011. [=[=][[http://dx.doi.org/10.1016/j.yjmcc.2011.11.009 | Link]]]
April 25, 2012, at 01:53 PM EST by 128.143.235.21 -
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!! Image Analysis Algorithms and Data\\
to:
!! Image Analysis Algorithms and Data\\\
Changed lines 5-6 from:
CellProfiler pipeline and example images [=[=][[http://people.virginia.edu/~jjs3g/lab_webpage/downloads/Bass_JMCC2012/Bass_JMCC2012pipeline.zip | download]]]\
This data was processed using CellProfiler Developer build 1.0.07522. CellProfiler can be downloaded at [[http://www.cellprofiler.org/previousReleases.shtml | link]].
to:
CellProfiler pipeline and example images [=[=][[http://people.virginia.edu/~jjs3g/lab_webpage/downloads/Bass_JMCC2012/Bass_JMCC2012pipeline.zip | download]]]\\
CellProfiler is developed by Anne Carpenter at the Broad Institute and should
be downloaded at [=[=][[http://www.cellprofiler.org/previousReleases.shtml | link]]]. Our data was processed using CellProfiler Developer build 1.0.7522 [=[=][[http://people.virginia.edu/~jjs3g/lab_webpage/downloads/Bass_JMCC2012/CellProfiler%20Developer%20r7522.zip | download]]].
April 25, 2012, at 01:41 PM EST by 128.143.235.21 -
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!! Image Analysis Algorithms and Data
to:
!! Image Analysis Algorithms and Data\\
Changed lines 5-6 from:
This data was processed using CellProfiler Developer build 1.0.07522. CellProfiler can be downloaded at [[http://www.cellprofiler.org/previousReleases.shtml | link]]
CellProfiler pipeline and example images [=[=][[http://people.virginia.edu/~jjs3g/lab_webpage/downloads/Bass_JMCC2012/Bass_JMCC2012pipeline.zip | download]]]
to:
CellProfiler pipeline and example images [=[=][[http://people.virginia.edu/~jjs3g/lab_webpage/downloads/Bass_JMCC2012/Bass_JMCC2012pipeline.zip | download]]]\
This data was processed using CellProfiler Developer build 1.0.07522. CellProfiler can be downloaded at
[[http://www.cellprofiler.org/previousReleases.shtml | link]].
April 25, 2012, at 01:39 PM EST by 128.143.235.21 -
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!! Image Analysis Algorithms and Data Sets
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!! Image Analysis Algorithms and Data
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CellProfiler pipeline and example images [[http://people.virginia.edu/~jjs3g/lab_webpage/downloads/Bass_JMCC2012/Bass_JMCC2012pipeline.zip | link]]
to:
CellProfiler pipeline and example images [=[=][[http://people.virginia.edu/~jjs3g/lab_webpage/downloads/Bass_JMCC2012/Bass_JMCC2012pipeline.zip | download]]]
April 25, 2012, at 01:18 PM EST by 128.143.235.21 -
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Bass JMCC data

[[http://people.virginia.edu/~jjs3g/lab_webpage/downloads/
Bass_JMCC2012/Bass_JMCC2012pipeline.zip | Pipeline and example images]]
to:

!! Image Analysis Algorithms and Data Sets

Bass GT, Ryall KA, Katikapalli A, Taylor BE, Dang ST, Acton ST, Saucerman JJ. Automated image analysis identifies signaling pathways regulating distinct signatures of cardiac myocyte hypertrophy. J Mol Cell Cardiol 2012.

This data was processed using CellProfiler Developer build 1.0.07522. CellProfiler can be downloaded at [[http://www.cellprofiler.org/previousReleases.shtml | link]]
CellProfiler pipeline and example images [[http://people.virginia.edu/~jjs3g/lab_webpage/downloads/Bass_JMCC2012/Bass_JMCC2012pipeline.zip | link
]]
April 25, 2012, at 01:11 PM EST by 128.143.235.21 -
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Bass JMCC data [[http:// | link text]]
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Bass JMCC data

[[http://people.virginia.edu/~jjs3g/lab_webpage/downloads/Bass_JMCC2012/Bass_JMCC2012pipeline.zip | Pipeline and example images]]
April 25, 2012, at 01:07 PM EST by 128.143.235.21 -
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Bass JMCC data [[http:// | link text]]
January 20, 2012, at 04:06 PM EST by 128.143.235.188 -
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Amanfu, RK, Muller, J, Saucerman JJ. Automated image analysis of cardiac myocyte Ca2+ dynamics. Conf Proc IEEE Eng Med Biol Soc 2011.
January 20, 2012, at 02:31 PM EST by 128.143.235.188 -
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Amanfu, RK, Muller, J, Saucerman JJ. Automated image analysis of cardiac myocyte Ca2+ dynamics. Conf Proc IEEE Eng Med Biol Soc 2011.