Other:

• Xenopus laevis
• Perl script to convert Simpheny output to SBML level 2, version 1 (modified from Feist & Palsson)
• TIGER: Toolbox for Integrating Genome-scale Metabolism, Expression, and Regulation [homepage] [documentation] [download]
  
• Metabolic Adjustment by Differential Expression (MADE) [source code] [documentation]
  (The most recent version of MADE, along with other tools for integrating expression data, is available as part of the TIGER software package.)
• Adenoid Cystic Carcinoma Database