MatNet

Publication

Biggs MB, and Papin JA. 2013. Cross-platform multiscale modeling: a novel tool applied to Pseudomonas aeruginosa biofilm formation. PLoS ONE, 8(10):e78011. [PubMed | Full Text | PDF]

Resources

  1. MatNet: the MATLAB-NetLogo extension
    [downloadable from wiki]
  2. MatNet model of Psuedomonas biofilm formation
    [download]
  3. biofilmData.mat (necessary to run the biofilm model)
    [download]
  4. biofilmDFBA.m (necessary to run the biofilm model)
    [download]